Index A | B | C | E | F | G | I | J | K | L | M | N | O | P | Q | R | S | T | W A attempts (calphy.input.MeltingTemperature attribute) B barostat_damping (calphy.input.Berendsen attribute) (calphy.input.MD attribute) (calphy.input.NoseHoover attribute) berendsen (calphy.input.Calculation attribute) Berendsen (class in calphy.input) C calculate_entropy_mix() (in module calphy.integrators) calculate_fe_impurity() (in module calphy.integrators) calculate_fe_mix() (in module calphy.integrators) Calculation (class in calphy.input) calphy.input module calphy.integrators module calphy.splines module cmdargs (calphy.input.MD attribute) commands (calphy.input.Queue attribute) composition_scaling (calphy.input.Calculation attribute) CompositionScaling (class in calphy.input) cores (calphy.input.Queue attribute) create_folders() (calphy.input.Calculation method) create_identifier() (calphy.input.Calculation method) E element (calphy.input.Calculation attribute) equilibration_control (calphy.input.Calculation attribute) F fe() (in module calphy.integrators) file_format (calphy.input.Calculation attribute) find_fe() (in module calphy.integrators) find_w() (in module calphy.integrators) fix_paths() (calphy.input.Calculation method) fix_potential_path (calphy.input.Calculation attribute) folder_prefix (calphy.input.Calculation attribute) G get_einstein_crystal_fe() (in module calphy.integrators) get_folder_name() (calphy.input.Calculation method) get_ideal_gas_fe() (in module calphy.integrators) get_uhlenbeck_ford_fe() (in module calphy.integrators) guess (calphy.input.MeltingTemperature attribute) I init_commands (calphy.input.MD attribute) inputfile (calphy.input.Calculation attribute) integrate_dcc() (in module calphy.integrators) integrate_mass() (in module calphy.integrators) integrate_path() (in module calphy.integrators) integrate_ps() (in module calphy.integrators) integrate_rs() (in module calphy.integrators) J jobname (calphy.input.Queue attribute) K kernel (calphy.input.Calculation attribute) L lammps_executable (calphy.input.Calculation attribute) lattice (calphy.input.Calculation attribute) lattice_constant (calphy.input.Calculation attribute) (calphy.input.Tolerance attribute) liquid_fraction (calphy.input.Tolerance attribute) load_job() (in module calphy.input) M mass (calphy.input.Calculation attribute) md (calphy.input.Calculation attribute) MD (class in calphy.input) melting_cycle (calphy.input.Calculation attribute) melting_temperature (calphy.input.Calculation attribute) MeltingTemperature (class in calphy.input) memory (calphy.input.Queue attribute) mode (calphy.input.Calculation attribute) model_computed_fields (calphy.input.Berendsen attribute) (calphy.input.Calculation attribute) (calphy.input.CompositionScaling attribute) (calphy.input.MD attribute) (calphy.input.MeltingTemperature attribute) (calphy.input.NoseHoover attribute) (calphy.input.Queue attribute) (calphy.input.Tolerance attribute) model_config (calphy.input.Berendsen attribute) (calphy.input.Calculation attribute) (calphy.input.CompositionScaling attribute) (calphy.input.MD attribute) (calphy.input.MeltingTemperature attribute) (calphy.input.NoseHoover attribute) (calphy.input.Queue attribute) (calphy.input.Tolerance attribute) model_fields (calphy.input.Berendsen attribute) (calphy.input.Calculation attribute) (calphy.input.CompositionScaling attribute) (calphy.input.MD attribute) (calphy.input.MeltingTemperature attribute) (calphy.input.NoseHoover attribute) (calphy.input.Queue attribute) (calphy.input.Tolerance attribute) model_post_init() (calphy.input.Calculation method) (calphy.input.CompositionScaling method) module calphy.input calphy.integrators calphy.splines modules (calphy.input.Queue attribute) mpi_executable (calphy.input.Calculation attribute) N n_cycles (calphy.input.MD attribute) n_elements (calphy.input.Calculation attribute) n_equilibration_steps (calphy.input.Calculation attribute) n_every_steps (calphy.input.MD attribute) n_iterations (calphy.input.Calculation attribute) n_print_steps (calphy.input.Calculation attribute) n_repeat_steps (calphy.input.MD attribute) n_small_steps (calphy.input.MD attribute) n_switching_steps (calphy.input.Calculation attribute) nose_hoover (calphy.input.Calculation attribute) NoseHoover (class in calphy.input) npt (calphy.input.Calculation attribute) O options (calphy.input.Queue attribute) output_chemical_composition (calphy.input.CompositionScaling attribute) P pair_coeff (calphy.input.Calculation attribute) pair_style (calphy.input.Calculation attribute) potential_file (calphy.input.Calculation attribute) press() (in module calphy.integrators) pressure (calphy.input.Calculation attribute) (calphy.input.Tolerance attribute) Q queue (calphy.input.Calculation attribute) Queue (class in calphy.input) queuename (calphy.input.Queue attribute) R read_inputfile() (in module calphy.input) read_report() (in module calphy.input) reference_phase (calphy.input.Calculation attribute) remove_peaks() (in module calphy.integrators) remove_steps() (in module calphy.integrators) repeat (calphy.input.Calculation attribute) restrictions (calphy.input.CompositionScaling attribute) S save_job() (in module calphy.input) savefile (calphy.input.Calculation property) scheduler (calphy.input.Queue attribute) script_mode (calphy.input.Calculation attribute) solid_fraction (calphy.input.Tolerance attribute) spring_constant (calphy.input.Tolerance attribute) spring_constants (calphy.input.Calculation attribute) step (calphy.input.MeltingTemperature attribute) T temperature (calphy.input.Calculation attribute) temperature_high (calphy.input.Calculation attribute) thermostat_damping (calphy.input.Berendsen attribute) (calphy.input.MD attribute) (calphy.input.NoseHoover attribute) timestep (calphy.input.MD attribute) to_list() (in module calphy.input) tolerance (calphy.input.Calculation attribute) Tolerance (class in calphy.input) W walltime (calphy.input.Queue attribute)